Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs112224666 chr1:152910501 G/A 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs112224955 chr10:104926876 G/A 9.35E-14 500 31.43 35.08 32.1 KM Plot
THCA rs112240253 chr10:104753726 C/T 8.96E-14 502 31.37 35.6 32.1 KM Plot
THCA rs112255065 chr10:104665888 C/T 3.19E-9 501 31.03 34.18 29.58 KM Plot
THCA rs112317325 chr8:58045962 C/G 4.28E-6 500 31.33 37.83 36.93 KM Plot
THCA rs112376039 chr18:13821321 C/CATGG 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs112425217 chr10:104778756 G/A 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs112472626 chr2:29036679 A/G 0.000138 502 31.68 30.97 38.87 KM Plot
THCA rs112507051 chr10:104648466 C/T 8.83E-14 501 31.37 36.17 32.1 KM Plot
THCA rs112679565 chr14:24661174 C/T 6.38E-7 492 31.7 31.77 18.15 KM Plot
THCA rs112809537 chr10:104670346 C/T 8.77E-14 501 31.03 35.87 32.1 KM Plot
THCA rs112831038 chr10:131961468 C/A 1.18E-5 502 31.47 32.9 27.18 KM Plot
THCA rs112883152 chr4:1081755 C/T 5.65E-5 489 31.47 31.47 36.43 KM Plot
THCA rs112955336 chr12:14451380 T/C 5.34E-5 498 31.4 36.93 32.45 KM Plot
THCA rs113030473 chr10:81649031 G/T 2.61E-9 494 31.7 31.45 14.52 KM Plot